Pashmina coat color informatics

Differentially expressed mRNAs

Click here to downlaod DE mRNA expression data in excel format.

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Gene	Locus	Sample_1	Sample_2	Value_1 (FPKM)	Value_2 (FPKM)	log2(fold_change)	P_Value
AADACL3	NC_022308.1:52294987-52324761	black	white	18.2875	5.50214	-1.73279	0.00005
AATK	NC_022311.1:50466266-50510769	black	white	1.27061	4.04844	1.67184	0.00005
ABCA1	NC_022300.1:92672042-92803488	black	white	10.0693	27.504	1.44968	0.00005
ABCA5	NC_022311.1:60060055-60112198	black	white	7.69621	17.8438	1.2132	0.0001
ABCG1	NC_022293.1:140102904-140160936	black	white	5.16238	13.6607	1.40392	0.00005
ABLIM1	NC_022318.1:33328042-33568831	black	white	19.8237	39.9708	1.01172	0.00185
ABLIM3	NC_022299.1:56765910-56898910	black	white	1.69447	3.40615	1.00731	0.00825
ACKR1	NC_022295.1:9957896-9960457	black	white	11.5565	2.15474	-2.42311	0.00005
ACSM1	NC_022317.1:18216555-18279545	black	white	3.54634	0.836621	-2.08368	0.00045
ACTBL2	NC_022312.1:21770812-21773281	black	white	6.75005	21.5292	1.67333	0.00005

Showing 1 to 10 of 1,427 entries

Differentially expressed lncRNAs

Click here to downlaod DE lncRNA expression data in excel format.

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Gene	Locus	Sample_1	Sample_2	Value_1 (FPKM)	Value_2 (FPKM)	log2(fold_change)	P_Value
LOC102168837	NC_022304.1:63212347-63252562	black	white	1.06981	3.98186	1.89609	0.0308
LOC102169221	NC_022293.1:77832007-77838340	black	white	1.43599	5.59417	1.96188	0.0019
LOC102171918	NC_022293.1:50548279-50553648	black	white	5.06118	2.43349	-1.05645	0.0302
LOC102172600	NC_022320.1:24944107-24979305	black	white	0.591187	1.5405	1.38171	0.04165
LOC102175559	NC_022297.1:89417043-89419906	black	white	2.49848	5.24976	1.0712	0.01955
LOC102176288	NC_022317.1:34665155-35028134	black	white	2.48644	6.90779	1.47414	0.00815
LOC102177771	NC_022318.1:48958148-48960686	black	white	1.22819	2.87236	1.2257	0.04055
LOC102179243	NC_022314.1:36320312-36787148	black	white	0.189873	1.01274	2.41516	0.04725
LOC102179377	NW_005101496.1:78257-102590	black	white	0.708305	2.27458	1.68315	0.04035
LOC102179411	NC_022311.1:13611065-13617022	black	white	87.0996	223.689	1.36076	0.00015

Showing 1 to 10 of 28 entries

Click here to downlaod pathway enrichment analysis result in excel format.

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Term	ID	Enriched genes	Background genes	P-Value	Corrected P-Value
Chemokine signaling pathway	chx04062	25	181	0.0001968117	0.0046088843
Cytokine-cytokine receptor interaction	chx04060	31	240	0.0001098584	0.0046088843
ECM-receptor interaction	chx04512	16	85	0.0001334433	0.0046088843
Focal adhesion	chx04510	26	206	0.0005203525	0.0073716607
Melanogenesis	chx04916	17	98	0.0001988146	0.0046088843
PI3K-Akt signaling pathway	chx04151	39	351	0.0002800402	0.0050722957
Rap1 signaling pathway	chx04015	28	211	0.0001544537	0.0046088843

Showing 1 to 7 of 7 entries

Click here to downlaod GO enrichment analysis result in excel format.

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Term	ID	Input number	Background number	P-Value	Corrected P-Value
anatomical structure morphogenesis	GO:0009653	25	1151	0.000267668	0.016613692
anion binding	GO:0043168	7	130	0.000427194	0.024822683
appendage development	GO:0048736	5	77	0.001305429	0.047535004
biological adhesion	GO:0022610	17	585	0.000108559	0.010588346
carboxylic acid binding	GO:0031406	5	69	0.000821316	0.036784092
cation binding	GO:0043169	35	1944	0.000547089	0.028732701
cell adhesion	GO:0007155	17	581	0.000100219	0.010588346
cell communication	GO:0007154	46	2885	0.000963597	0.040485887
cell development	GO:0048468	22	832	0.0000425	0.008297013
cell differentiation	GO:0030154	33	1616	0.0000867	0.010588346

Showing 1 to 10 of 71 entries