mRNAs regulated by lncRNAs in cis configuration

(i.e. in 100 kb up-stream and down-stream region)

lncRNAs regulating mRNAs in cis-configuration

Click here to downlaod data in excel format.
LOC102170010
TRIM27
lncRNAmRNAs
LOC106502238 RNF212
LOC102187580
CTBP1
LOC102188128
DGKQ
LOC102188666
SLC26A1
LOC106502240
LOC106502239
LOC106503481 GCLC
LOC102186442
LOC102186727
PSMB9
TAP1
PSMB8
TAP2
LOC102180357
LOC102187356
LOC106503480
LOC102176977 LOC102188237
LOC102176706
LOC102177641
TRNAC-GCA
LOC102177175
LOC102188515
LOC106503063 ZNF70
VPREB3
C17H22orf15
CHCHD10
MMP11
SMARCB1
DERL3
SLC2A11
LOC102182160
DDT
LOC102178383
LOC102179973
LOC102181967 ANKEF1
SNAP25
TRNAF-GAA
LOC106503218 KRT39
LOC102169700
KRT40
LOC102170546
LOC102170264
LOC100861179
KRTAP3-1
LOC102178483
LOC106503215
LOC102172755
LOC102179044
LOC102171368
LOC106503204
LOC106503203
LOC106503217
LOC106503216
LOC102178767
LOC102169815 LOC102174177
ZNF311
LOC102185515 LOC102186533
METTL21A
CREB1
LOC102184574 IVL
SMCP
LOC102184392
LOC102185235
LOC102184770
LOC102184758 MXRA7
LOC106503228
ST6GALNAC1
LOC102184279
RHBDF2
CYGB
PRCD
LOC102184471
ST6GALNAC2
LOC102170937 IL6
TOMM7
FAM126A
LOC102168946 LOC106503398
LOC106503383
LOC102168394
MIR493
MIR665
MIR433
MIR656
MIR323B
MIR410
MIR369
MIR412
MIR409
MIR377
MIR496
MIR154B
MIR154A
MIR485
MIR134
MIR382
MIR487A
MIR3959
MIR655
MIR544
MIR487B
MIR381
MIR1185
MIR376A
MIR376B
MIR376D
MIR376C
MIR376E
MIR3958
MIR495
MIR543
MIR494
MIR329A
MIR329B
MIR758
MIR323A
MIR1197
MIR411B
MIR380
MIR411A
MIR379
LOC106503694 FXYD4
HNRNPF
LOC102184958 LOC102188814
LOC102184105
LOC102171558
LOC102184389
LOC102184677
TRIM40
TRIM10
TRIM15
TRIM26
LOC106501748
LOC102185776 RHBDF2
LOC102190991
LOC102191270
UBE2O
SPHK1
LOC102185500
RNF157
UBALD2
QRICH2
PRPSAP1
LOC106503620 COL26A1
PLOD3
ZNHIT1
CLDN15
FIS1
LOC106503588
IFT22
LOC102180344 LOC102179130
LOC106503180
LOC102179590
LOC102179878
LOC102181154
LOC102180880
LOC102186545 LOC102174794
PRSS33
TCEB2
SRRM2
LOC102176755
PKMYT1
PAQR4
KREMEN2
FLYWCH1
FLYWCH2
LOC106502886 LOC106502880
MIR100
LOC102171918 LOC102170819
LOC102172101
LOC102181394 EXD1
CHP1
NDUFAF1
NUSAP1
OIP5
LOC102175559 DDX47
APOLD1
CDKN1B
LOC102176676
CREBL2
GPR19
LOC106502870 DPY19L4
TRNAG-CCC
ESRP1
KIAA1429
LOC102186227
LOC102177771 JAKMIP3
LOC106503652
BNIP3
LOC106503653
LOC102179411 LOC106503181
HEATR6
LOC106503180
LOC102179130
LOC102169698
LOC106503370 AGFG1
SLC19A3
LOC102185410
LOC102172600 PCBD1
LOC102172414
LOC102176288 ORAI2
PRKRIP1
SH2B2
LOC106503586
LOC102179377 LOC102179557
LOC102179617 GMDS
FOXC1
FOXF2
LOC102168837 MIR92A
MIR19B
MIR20A
MIR19A
MIR18A
MIR17
LOC106503317 PDZD2
LOC106502376 LOC106502375

GO enrichment analysis of mRNAs regulated by lncRNAs

Click here to downlaod GO enrichment analysis result in excel format.
GO_accTermTypeP-ValueCorrected P-Value
GO:0048518positive regulation of biological processP3.90E-233.20E-20
GO:0005737cytoplasmC5.20E-199.00E-17
GO:0048519negative regulation of biological processP5.40E-192.20E-16
GO:0031981nuclear lumenC5.40E-183.30E-16
GO:0044422organelle partC8.40E-183.30E-16
GO:0044446intracellular organelle partC8.40E-183.30E-16
GO:0044428nuclear partC9.60E-183.30E-16
GO:0043233organelle lumenC2.00E-175.00E-16
GO:0070013intracellular organelle lumenC2.00E-175.00E-16
GO:0030154cell differentiationP3.50E-187.60E-16
GO:0048522positive regulation of cellular processP3.80E-187.60E-16
GO:0031974membrane-enclosed lumenC1.20E-162.50E-15
GO:0005654nucleoplasmC2.00E-163.90E-15
GO:0044444cytoplasmic partC2.70E-154.60E-14
GO:0044424intracellular partC3.00E-154.60E-14
GO:0048731system developmentP6.10E-169.80E-14
GO:0048523negative regulation of cellular processP7.20E-169.80E-14
GO:0055085transmembrane transportP1.20E-151.40E-13
GO:0048856anatomical structure developmentP2.50E-152.50E-13
GO:0048869cellular developmental processP5.80E-155.20E-13
GO:0043227membrane-bounded organelleC4.40E-146.30E-13
GO:0048513organ developmentP9.50E-157.70E-13
GO:0043231intracellular membrane-bounded organelleC2.60E-133.50E-12
GO:0043226organelleC4.50E-135.50E-12
GO:0032501multicellular organismal processP9.40E-146.90E-12
GO:0043229intracellular organelleC2.30E-122.70E-11
GO:0005783endoplasmic reticulumC2.60E-122.80E-11
GO:0032502developmental processP4.80E-133.30E-11
GO:0065008regulation of biological qualityP9.80E-136.00E-11
GO:0015833peptide transportP1.00E-126.00E-11
GO:0044432endoplasmic reticulum partC9.60E-129.70E-11
GO:0009893positive regulation of metabolic processP2.80E-121.50E-10
GO:0010605negative regulation of macromolecule metabolic processP3.30E-121.70E-10
GO:0005622intracellularC1.80E-111.70E-10
GO:0010629negative regulation of gene expressionP6.90E-123.30E-10
GO:0009892negative regulation of metabolic processP7.40E-123.30E-10
GO:0042221response to chemical stimulusP8.00E-123.40E-10
GO:0045892negative regulation of transcription, DNA-dependentP3.20E-111.20E-09
GO:0051253negative regulation of RNA metabolic processP3.20E-111.20E-09
GO:0007275multicellular organismal developmentP6.00E-112.20E-09
GO:0044451nucleoplasm partC4.50E-104.10E-09
GO:0019899enzyme bindingF3.10E-115.40E-09
GO:0002376immune system processP1.90E-106.60E-09
GO:0010604positive regulation of macromolecule metabolic processP2.20E-107.30E-09
GO:0031325positive regulation of cellular metabolic processP2.20E-107.30E-09
GO:0051239regulation of multicellular organismal processP4.90E-101.50E-08
GO:0016481negative regulation of transcriptionP4.90E-101.50E-08
GO:0043234protein complexC1.90E-091.60E-08
GO:0009719response to endogenous stimulusP9.40E-102.50E-08
GO:0009725response to hormone stimulusP9.40E-102.50E-08
GO:0002682regulation of immune system processP9.40E-102.50E-08
GO:0009888tissue developmentP1.70E-094.40E-08
GO:0045934negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic processP1.80E-094.40E-08
GO:0051172negative regulation of nitrogen compound metabolic processP1.80E-094.40E-08
GO:0006366transcription from RNA polymerase II promoterP2.20E-095.20E-08
GO:0010558negative regulation of macromolecule biosynthetic processP4.00E-099.10E-08
GO:0031327negative regulation of cellular biosynthetic processP4.00E-099.10E-08
GO:0032879regulation of localizationP4.70E-091.00E-07
GO:0009890negative regulation of biosynthetic processP5.10E-091.10E-07
GO:0007005mitochondrion organizationP7.30E-091.50E-07
GO:0005829cytosolC2.00E-081.60E-07
GO:0009653anatomical structure morphogenesisP8.20E-091.70E-07
GO:0000003reproductionP9.00E-091.70E-07
GO:0022414reproductive processP9.00E-091.70E-07
GO:0031324negative regulation of cellular metabolic processP1.30E-082.40E-07
GO:0003008system processP1.40E-082.50E-07
GO:0006357regulation of transcription from RNA polymerase II promoterP1.60E-082.90E-07
GO:0044421extracellular region partC4.80E-083.80E-07
GO:0090066regulation of anatomical structure sizeP3.30E-085.70E-07
GO:0065009regulation of molecular functionP4.10E-086.90E-07
GO:0070647protein modification by small protein conjugation or removalP4.20E-086.90E-07
GO:0032446protein modification by small protein conjugationP4.20E-086.90E-07
GO:0044464cell partC1.20E-078.70E-07
GO:0005623cellC1.20E-078.70E-07
GO:0016043cellular component organizationP5.70E-089.30E-07
GO:0019220regulation of phosphate metabolic processP6.30E-089.70E-07
GO:0019882antigen processing and presentationP6.30E-089.70E-07
GO:0051174regulation of phosphorus metabolic processP6.30E-089.70E-07
GO:0018193peptidyl-amino acid modificationP7.20E-081.10E-06
GO:0050896response to stimulusP8.30E-081.20E-06
GO:0044093positive regulation of molecular functionP1.20E-071.70E-06
GO:0051179localizationP1.70E-072.40E-06
GO:0051128regulation of cellular component organizationP2.30E-073.20E-06
GO:0042592homeostatic processP3.10E-074.20E-06
GO:0006950response to stressP3.20E-074.40E-06
GO:0051716cellular response to stimulusP3.60E-074.80E-06
GO:0051234establishment of localizationP5.90E-077.70E-06
GO:0042325regulation of phosphorylationP1.30E-061.60E-05
GO:0033036macromolecule localizationP1.80E-062.30E-05
GO:0051649establishment of localization in cellP2.10E-062.60E-05
GO:0006810transportP2.40E-062.90E-05
GO:0048878chemical homeostasisP2.60E-063.20E-05
GO:0051641cellular localizationP2.70E-063.20E-05
GO:0050793regulation of developmental processP2.90E-063.40E-05
GO:0042626ATPase activity, coupled to transmembrane movement of substancesF9.10E-074.60E-05
GO:0043492ATPase activity, coupled to movement of substancesF9.10E-074.60E-05
GO:0015405P-P-bond-hydrolysis-driven transmembrane transporter activityF1.30E-064.60E-05
GO:0015399primary active transmembrane transporter activityF1.30E-064.60E-05
GO:0016820hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substancesF1.60E-064.70E-05
GO:0032991macromolecular complexC9.90E-066.80E-05
GO:0006996organelle organizationP6.90E-068.00E-05
GO:0005739mitochondrionC1.40E-059.00E-05
GO:0044262cellular carbohydrate metabolic processP1.10E-050.00013
GO:0022804active transmembrane transporter activityF6.40E-060.00016
GO:0008104protein localizationP1.40E-050.00016
GO:0043067regulation of programmed cell deathP1.90E-050.00021
GO:0042981regulation of apoptosisP1.90E-050.00021
GO:0010941regulation of cell deathP1.90E-050.00021
GO:0043413macromolecule glycosylationP4.00E-050.00041
GO:0009100glycoprotein metabolic processP4.00E-050.00041
GO:0006486protein amino acid glycosylationP4.00E-050.00041
GO:0009101glycoprotein biosynthetic processP4.00E-050.00041
GO:0070085glycosylationP4.00E-050.00041
GO:0051246regulation of protein metabolic processP4.90E-050.00049
GO:0042623ATPase activity, coupledF2.60E-050.00057
GO:0046907intracellular transportP6.60E-050.00065
GO:0019222regulation of metabolic processP6.80E-050.00067
GO:0043412macromolecule modificationP7.30E-050.00071
GO:0045184establishment of protein localizationP8.30E-050.00079
GO:0005886plasma membraneC0.000130.00082
GO:0031090organelle membraneC0.000140.00084
GO:0005634nucleusC0.000140.00084
GO:0050790regulation of catalytic activityP0.000120.0012
GO:0012501programmed cell deathP0.000130.0012
GO:0006915apoptosisP0.000130.0012
GO:0006952defense responseP0.000130.0012
GO:0016265deathP0.000160.0014
GO:0008219cell deathP0.000160.0014
GO:0006464protein modification processP0.00020.0018
GO:0016887ATPase activityF0.000150.0029
GO:0015031protein transportP0.00060.0053
GO:0005576extracellular regionC0.000930.0053
GO:0012505endomembrane systemC0.000960.0053
GO:0022892substrate-specific transporter activityF0.000390.0068
GO:0005856cytoskeletonC0.00130.0068
GO:0022857transmembrane transporter activityF0.000430.0069
GO:0031967organelle envelopeC0.00130.007
GO:0031975envelopeC0.00140.0072
GO:0050662coenzyme bindingF0.000520.0077
GO:0005515protein bindingF0.000760.01
GO:0010646regulation of cell communicationP0.00120.01
GO:0009987cellular processP0.00120.01
GO:0031323regulation of cellular metabolic processP0.00120.011
GO:0006886intracellular protein transportP0.00150.013
GO:0070727cellular macromolecule localizationP0.00160.013
GO:0034613cellular protein localizationP0.00160.013
GO:0005975carbohydrate metabolic processP0.00180.015
GO:0005215transporter activityF0.00160.02
GO:0010468regulation of gene expressionP0.00250.02
GO:0000166nucleotide bindingF0.00190.022
GO:0048037cofactor bindingF0.0030.033
GO:0060255regulation of macromolecule metabolic processP0.00410.033
GO:0005102receptor bindingF0.00390.04
GO:0006955immune responseP0.00570.045
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic processP0.00580.045
GO:0016310phosphorylationP0.00620.048
GO:0008152metabolic processP0.00640.049